Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cerebellum
MeSH Description
The part of brain that lies behind the BRAIN STEM in the posterior base of skull (CRANIAL FOSSA, POSTERIOR). It is also known as the "little brain" with convolutions similar to those of CEREBRAL CORTEX, inner white matter, and deep cerebellar nuclei. Its function is to coordinate voluntary movements, maintain balance, and learn motor skills.

Attributes by original data submitter

Sample

source_name
Mouse_Cerebellum
strain
FVB
tissue
Cerebellum pooled
age
56 days post partum
genotype
Wiz +/+
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cerebellum were removed and pooled from 2 mice and flash frozen on dry ice. Testis were sent to Active Motif (CA, USA) who then carried out ChIP and library construction as well as Input DNA library construction (Cat No. 25001 and 25046). ChIP libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
33504994
Reads aligned (%)
92.5
Duplicates removed (%)
19.4
Number of peaks
422 (qval < 1E-05)

mm9

Number of total reads
33504994
Reads aligned (%)
92.5
Duplicates removed (%)
19.5
Number of peaks
398 (qval < 1E-05)

Base call quality data from DBCLS SRA