Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549-CHIP-MED1
cell line
A549 (ATCC, CCL-185)
cell type
Lung adenocarcinoma-derived cells
passages
8
treated with
0.01% EtOH, 60min
chip antibody
MED1 (Bethyl, A300-793A, lot:2)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
29436631
Reads aligned (%)
90.1
Duplicates removed (%)
4.0
Number of peaks
2679 (qval < 1E-05)

hg38

Number of total reads
29436631
Reads aligned (%)
91.6
Duplicates removed (%)
3.2
Number of peaks
2665 (qval < 1E-05)

Base call quality data from DBCLS SRA