SRX153178
GSM946538: PSU ChipSeq G1E Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
G1E
Tissue
Blood
Lineage
cellLine
Description
Gata1- erythroid progenitor

Attributes by original data submitter

Sample

source_name
G1E
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
G1E
cell organism
mouse
cell description
Gata1- erythroid progenitor
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E0
age description
Embryonic day 0 (stem cell)
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM001916
replicate
1
strain
129
strain description
Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name
GSM946538: PSU_ChipSeq_G1E_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
156408683
Reads aligned (%)
96.7
Duplicates removed (%)
7.7
Number of peaks
1057 (qval < 1E-05)

mm9

Number of total reads
156408683
Reads aligned (%)
96.5
Duplicates removed (%)
7.7
Number of peaks
1261 (qval < 1E-05)

Base call quality data from DBCLS SRA