Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
immortalized
age description
Immortal cells
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM001923
replicate
1
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name
GSM946521: PSU_ChipSeq_CH12_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
146909822
Reads aligned (%)
96.1
Duplicates removed (%)
7.2
Number of peaks
952 (qval < 1E-05)

mm9

Number of total reads
146909822
Reads aligned (%)
95.9
Duplicates removed (%)
7.2
Number of peaks
1167 (qval < 1E-05)

Base call quality data from DBCLS SRA