SRX153149
GSM946853: HCT116 H3K4me1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Human colorectal cancer cell-line HCT116
cell-line
HCT116
passage
9
chip antibody
H3K4me1 (CellSignalingTechnologies, 9723S, lot#1)

Sequenced DNA Library

library_name
GSM946853: HCT116_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
62387855
Reads aligned (%)
98.9
Duplicates removed (%)
5.2
Number of peaks
31739 (qval < 1E-05)

hg19

Number of total reads
62387855
Reads aligned (%)
98.2
Duplicates removed (%)
6.1
Number of peaks
30434 (qval < 1E-05)

Base call quality data from DBCLS SRA