Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Human breast adenocarcinoma cell-line MCF7
cell-line
MCF7
passage
5
chip antibody
H3K4me1 (CellSignalingTechnologies, 9723S, lot#1)

Sequenced DNA Library

library_name
GSM946849: MCF7_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
93237597
Reads aligned (%)
99.1
Duplicates removed (%)
7.0
Number of peaks
1204 (qval < 1E-05)

hg19

Number of total reads
93237597
Reads aligned (%)
98.2
Duplicates removed (%)
8.2
Number of peaks
1366 (qval < 1E-05)

Base call quality data from DBCLS SRA