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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: RAJI
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX153079
GSM945572: Total PolII (N20) + a-amanitin36hrs Raji WT; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type
Attributes by original data submitter
Sample
source_name
Human Raji WT
tissue
Burkitt's lymphoma
passages
N.D.
cell line
Raji
antibody
PolII
treatment
2.5 ug/ml of alpha-amanitin for 36 hrs
Sequenced DNA Library
library_name
GSM945572: Total PolII (N20) + a-amanitin36hrs Raji WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
36181944
Reads aligned (%)
88.8
Duplicates removed (%)
70.4
Number of peaks
508 (qval < 1E-05)
hg19
Number of total reads
36181944
Reads aligned (%)
88.0
Duplicates removed (%)
72.1
Number of peaks
1012 (qval < 1E-05)
Base call quality data from
DBCLS SRA