Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Human Raji WT
tissue
Burkitt's lymphoma
passages
N.D.
cell line
Raji
antibody
PolII
treatment
2.5 ug/ml of alpha-amanitin for 36 hrs

Sequenced DNA Library

library_name
GSM945572: Total PolII (N20) + a-amanitin36hrs Raji WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
36181944
Reads aligned (%)
88.8
Duplicates removed (%)
70.4
Number of peaks
508 (qval < 1E-05)

hg19

Number of total reads
36181944
Reads aligned (%)
88.0
Duplicates removed (%)
72.1
Number of peaks
1012 (qval < 1E-05)

Base call quality data from DBCLS SRA