SRX153077
GSM945570: Total PolII (N20) Raji WT; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Human Raji WT
tissue
Burkitt's lymphoma
passages
N.D.
cell line
Raji
antibody
PolII

Sequenced DNA Library

library_name
GSM945570: Total PolII (N20) Raji WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45718545
Reads aligned (%)
89.3
Duplicates removed (%)
31.2
Number of peaks
14013 (qval < 1E-05)

hg19

Number of total reads
45718545
Reads aligned (%)
88.6
Duplicates removed (%)
32.2
Number of peaks
14571 (qval < 1E-05)

Base call quality data from DBCLS SRA