Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
Neuroblastoma
cell line
neuroblastoma cell line SK-N-SH
chip antibody
Rad21 (Abcam, catalog# ab992)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and CTCF,Rad21,RNAPII, histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
25889839
Reads aligned (%)
47.1
Duplicates removed (%)
51.9
Number of peaks
9891 (qval < 1E-05)

hg38

Number of total reads
25889839
Reads aligned (%)
49.0
Duplicates removed (%)
50.4
Number of peaks
9889 (qval < 1E-05)

Base call quality data from DBCLS SRA