SRX1528431
GSM2037453: Input-H1299; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
Input, H1299
cell line
H1299
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. genomic DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27197668
Reads aligned (%)
91.0
Duplicates removed (%)
2.9
Number of peaks
898 (qval < 1E-05)

hg19

Number of total reads
27197668
Reads aligned (%)
89.3
Duplicates removed (%)
7.3
Number of peaks
1176 (qval < 1E-05)

Base call quality data from DBCLS SRA