Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USP7

Cell type

Cell type Class
Lung
Cell type
NCI-H1299
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
HAUSP, H1299
cell line
H1299
chip antibody
HAUSP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. genomic DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
66262681
Reads aligned (%)
90.1
Duplicates removed (%)
5.5
Number of peaks
1690 (qval < 1E-05)

hg38

Number of total reads
66262681
Reads aligned (%)
92.9
Duplicates removed (%)
3.5
Number of peaks
1824 (qval < 1E-05)

Base call quality data from DBCLS SRA