Antigen

Antigen Class

TFs and others

Antigen

USP7

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HAUSP, MDA-MB-231

cell line

MDA-MB-231

chip antibody

HAUSP

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. genomic DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

62381644

Reads aligned (%)

97.0

Duplicates removed (%)

3.2

Number of peaks

1901 (qval < 1E-05)

hg19

Number of total reads

62381644

Reads aligned (%)

96.2

Duplicates removed (%)

4.8

Number of peaks

1678 (qval < 1E-05)