Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USP7

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HAUSP, MDA-MB-231
cell line
MDA-MB-231
chip antibody
HAUSP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. genomic DNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
62381644
Reads aligned (%)
91.6
Duplicates removed (%)
4.8
Number of peaks
1678 (qval < 1E-05)

hg38

Number of total reads
62381644
Reads aligned (%)
93.9
Duplicates removed (%)
3.2
Number of peaks
1901 (qval < 1E-05)

Base call quality data from DBCLS SRA