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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K79me2
wikigenes
PDBj
CellType: Common myeloid progenitor
ATCC
MeSH
RIKEN BRC
SRX1527581
GSM2037141: CMP-MN1-L H3K79me2 2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K79me2
Cell type
Cell type Class
Blood
Cell type
Common myeloid progenitor
NA
NA
Attributes by original data submitter
Sample
source_name
myeloid leukemia
cell type
Bone marrow leukemic blasts sorted from moribund mice that had been transplanted with CMP-cells transformed with MN1
genotype
Genotype: Dot1l f/f (conditional allele, NOT inactivated)
strain
C57BL/6
chip-antibody
Abcam anti-H3K79me2 (ab3594)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using standard ChIP protocol Nugen Ovation Ultra low system V2
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29658921
Reads aligned (%)
98.9
Duplicates removed (%)
21.5
Number of peaks
4788 (qval < 1E-05)
mm9
Number of total reads
29658921
Reads aligned (%)
98.9
Duplicates removed (%)
21.6
Number of peaks
4786 (qval < 1E-05)
Base call quality data from
DBCLS SRA