Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
Loucy
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Loucy_EPZ00477
cell line
Loucy
cell type
human early T-cell precursor lymphoid leukemia cell line
genotype
non-MLL-rearranged
chip-antibody
Abcam anti-H3K79me2 (ab3594)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using standard ChIP protocol Nugen Ovation Ultra low system V2

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
50803122
Reads aligned (%)
99.0
Duplicates removed (%)
2.4
Number of peaks
1252 (qval < 1E-05)

hg19

Number of total reads
50803122
Reads aligned (%)
98.2
Duplicates removed (%)
3.9
Number of peaks
1266 (qval < 1E-05)

Base call quality data from DBCLS SRA