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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K79me2
wikigenes
PDBj
CellType: Loucy
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1527577
GSM2037137: Loucy - EPZ00477; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K79me2
Cell type
Cell type Class
Blood
Cell type
Loucy
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
Loucy_EPZ00477
cell line
Loucy
cell type
human early T-cell precursor lymphoid leukemia cell line
genotype
non-MLL-rearranged
chip-antibody
Abcam anti-H3K79me2 (ab3594)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was isolated using standard ChIP protocol Nugen Ovation Ultra low system V2
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
50803122
Reads aligned (%)
99.0
Duplicates removed (%)
2.4
Number of peaks
1252 (qval < 1E-05)
hg19
Number of total reads
50803122
Reads aligned (%)
98.2
Duplicates removed (%)
3.9
Number of peaks
1266 (qval < 1E-05)
Base call quality data from
DBCLS SRA