Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
Null+EZH2_H3K4me3
cell line
H9
cell type
embryonic stem cell (ESC)
genotype/variation
EZH2 -/- +EZH2 (Null + EZH2)
chip antibody
H3K4me3 (Abcam, ab8580)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
35383358
Reads aligned (%)
98.3
Duplicates removed (%)
17.6
Number of peaks
33155 (qval < 1E-05)

hg19

Number of total reads
35383358
Reads aligned (%)
97.6
Duplicates removed (%)
18.8
Number of peaks
32752 (qval < 1E-05)

Base call quality data from DBCLS SRA