Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Trl
wikigenes
PDBj
CellType: Imaginal wing disc
ATCC
MeSH
RIKEN BRC
SRX152100
GSM945892: GAF wing disc ChIP, replicate2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Trl
Cell type
Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA
Attributes by original data submitter
Sample
source_name
Wing imaginal disc ChIP; Iso1 strain; GAF antibody
strain
Iso1
developmental stage
L3
tissue
Wing imaginal disc
antibody
anti-Trl (antii-GAF)
Sequenced DNA Library
library_name
GSM945892: GAF wing disc ChIP, replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
20241401
Reads aligned (%)
40.3
Duplicates removed (%)
39.1
Number of peaks
8265 (qval < 1E-05)
dm6
Number of total reads
20241401
Reads aligned (%)
32.3
Duplicates removed (%)
50.4
Number of peaks
5300 (qval < 1E-05)
Base call quality data from
DBCLS SRA