Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trl

Cell type

Cell type Class
Embryo
Cell type
8-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
8-16hr embryo ChIP; Iso1 strain; GAF antibody
strain
Iso1
developmental stage
Embryo, 8-16hr
tissue
Whole embryo
antibody
anti-Trl (antii-GAF)

Sequenced DNA Library

library_name
GSM945883: GAF embryo ChIP, replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
13804609
Reads aligned (%)
67.1
Duplicates removed (%)
29.2
Number of peaks
3846 (qval < 1E-05)

dm6

Number of total reads
13804609
Reads aligned (%)
65.8
Duplicates removed (%)
30.3
Number of peaks
3108 (qval < 1E-05)

Base call quality data from DBCLS SRA