Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trl

Cell type

Cell type Class
Embryo
Cell type
8-16h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
8-16hr embryo ChIP; Iso1 strain; GAF antibody
strain
Iso1
developmental stage
Embryo, 8-16hr
tissue
Whole embryo
antibody
anti-Trl (antii-GAF)

Sequenced DNA Library

library_name
GSM945882: GAF embryo ChIP, replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
37981047
Reads aligned (%)
95.3
Duplicates removed (%)
67.4
Number of peaks
9114 (qval < 1E-05)

dm6

Number of total reads
37981047
Reads aligned (%)
93.9
Duplicates removed (%)
70.3
Number of peaks
9242 (qval < 1E-05)

Base call quality data from DBCLS SRA