Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trim28

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
Total thymocytes, KAP1 KO, KAP1 ChIP
strain/background
C57BL/6 / sv129sv
genotype
T cell-specific Kap1 knockout
cell type
T cell progenitors
chip antibody
RBCC (KAP1 amino acids 20–418)

Sequenced DNA Library

library_name
GSM945742: KAP1_KAP1-KO_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
25358176
Reads aligned (%)
96.3
Duplicates removed (%)
36.9
Number of peaks
490 (qval < 1E-05)

mm9

Number of total reads
25358176
Reads aligned (%)
95.9
Duplicates removed (%)
36.9
Number of peaks
591 (qval < 1E-05)

Base call quality data from DBCLS SRA