Antigen

Antigen Class

TFs and others

Antigen

Trim28

Cell type

Cell type Class

Blood

Cell type

Thymocytes

MeSH Description

HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Sample

source_name

Total thymocytes, WT, KAP1 ChIP

strain/background

C57BL/6 / sv129sv

genotype

wild type

cell type

T cell progenitors

chip antibody

RBCC (KAP1 amino acids 20–418)

Sequenced DNA Library

library_name

GSM945741: KAP1_WT_ChIPSeq

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

61236860

Reads aligned (%)

97.5

Duplicates removed (%)

33.2

Number of peaks

763 (qval < 1E-05)

mm9

Number of total reads

61236860

Reads aligned (%)

97.2

Duplicates removed (%)

33.2

Number of peaks

916 (qval < 1E-05)