SRX151950
GSM945609: Blood Donor No.4 stimulated PBMCs STAT4 ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT4

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
stimulated PBMCs_STAT4 ChIP-Seq
cell type
peripheral blood mononuclear cells (PBMCs)
stimulated with
500 U/ml of IFN-α2b
chip antibody
STAT4
chip antibody vendor
Santa Cruz Biotechnology

Sequenced DNA Library

library_name
GSM945609: Blood Donor No.4_stimulated PBMCs_STAT4 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32662822
Reads aligned (%)
96.4
Duplicates removed (%)
63.5
Number of peaks
467 (qval < 1E-05)

hg19

Number of total reads
32662822
Reads aligned (%)
95.8
Duplicates removed (%)
64.6
Number of peaks
747 (qval < 1E-05)

Base call quality data from DBCLS SRA