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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: IRF5
wikigenes
PDBj
CellType: PBMC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX151945
GSM945604: Blood Donor No.5 stimulated PBMCs IRF5 ChIP-Seq rep; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
IRF5
Cell type
Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells
Attributes by original data submitter
Sample
source_name
stimulated PBMCs_IRF5 ChIP-Seq
cell type
peripheral blood mononuclear cells (PBMCs)
stimulated with
immune complexes
chip antibody
IRF5
chip antibody vendor
Abcam
Sequenced DNA Library
library_name
GSM945604: Blood Donor No.5_stimulated PBMCs_IRF5 ChIP-Seq rep
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
79393128
Reads aligned (%)
6.6
Duplicates removed (%)
92.8
Number of peaks
1410 (qval < 1E-05)
hg38
Number of total reads
79393128
Reads aligned (%)
7.8
Duplicates removed (%)
91.5
Number of peaks
1687 (qval < 1E-05)
Base call quality data from
DBCLS SRA