SRX151945
GSM945604: Blood Donor No.5 stimulated PBMCs IRF5 ChIP-Seq rep; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF5

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
stimulated PBMCs_IRF5 ChIP-Seq
cell type
peripheral blood mononuclear cells (PBMCs)
stimulated with
immune complexes
chip antibody
IRF5
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM945604: Blood Donor No.5_stimulated PBMCs_IRF5 ChIP-Seq rep
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
79393128
Reads aligned (%)
6.6
Duplicates removed (%)
92.8
Number of peaks
1410 (qval < 1E-05)

hg38

Number of total reads
79393128
Reads aligned (%)
7.8
Duplicates removed (%)
91.5
Number of peaks
1687 (qval < 1E-05)

Base call quality data from DBCLS SRA