Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF5

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
non-stimulated PBMCs_IRF5 ChIP-Seq
cell type
peripheral blood mononuclear cells (PBMCs)
chip antibody
IRF5
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM945600: Blood Donor No.2_non-stimulated PBMCs_IRF5 ChIP-Seq rep
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
30264387
Reads aligned (%)
21.8
Duplicates removed (%)
73.6
Number of peaks
3916 (qval < 1E-05)

hg38

Number of total reads
30264387
Reads aligned (%)
23.9
Duplicates removed (%)
71.5
Number of peaks
3999 (qval < 1E-05)

Base call quality data from DBCLS SRA