SRX151896
GSM945520: HUVEC H3K27Ac DMSO 24hr hypoxia; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HUVECs
cell type
Human umbilical vein cells
passage
within 6 passage
treatment
hypoxia 24h
chip antibody
H3K27Ac

Sequenced DNA Library

library_name
GSM945520: HUVEC H3K27Ac DMSO 24hr hypoxia
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32775050
Reads aligned (%)
95.4
Duplicates removed (%)
25.1
Number of peaks
69725 (qval < 1E-05)

hg19

Number of total reads
32775050
Reads aligned (%)
95.2
Duplicates removed (%)
25.2
Number of peaks
69567 (qval < 1E-05)

Base call quality data from DBCLS SRA