Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell type
EPOP Knockout
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using antibodies for EPOP, H3K4me3, Elongin B, RNA Polymerase II S5, USP7 or H2Bub. RNA-Seq samples were prepared by isolating total RNA using Trizol, mRNA Isolation, heat fractionation, reverse transcription and second strand synthesis Libraries were constructed of 10-50 ng of DNA following Illumina's® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19083978
Reads aligned (%)
88.6
Duplicates removed (%)
34.7
Number of peaks
441 (qval < 1E-05)

mm9

Number of total reads
19083978
Reads aligned (%)
88.5
Duplicates removed (%)
34.8
Number of peaks
414 (qval < 1E-05)

Base call quality data from DBCLS SRA