Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Bub

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell type
Control
chip antibody
H2Bub; Cell Signaling, 5546S

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using antibodies for EPOP, H3K4me3, Elongin B, RNA Polymerase II S5, USP7 or H2Bub. RNA-Seq samples were prepared by isolating total RNA using Trizol, mRNA Isolation, heat fractionation, reverse transcription and second strand synthesis Libraries were constructed of 10-50 ng of DNA following Illumina's® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
19672103
Reads aligned (%)
97.8
Duplicates removed (%)
4.0
Number of peaks
11878 (qval < 1E-05)

mm9

Number of total reads
19672103
Reads aligned (%)
97.7
Duplicates removed (%)
4.1
Number of peaks
11859 (qval < 1E-05)

Base call quality data from DBCLS SRA