Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
unc-62

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Snyder_UNC-62_GFP_D4YA_rep2
strain
OP600(official name : OP600 genotype : unc119(ed3); wgIs600(unc-62::TY1 EGFP FLAG; unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The UNC-62::EGFP fusion protein is expressed in the correct unc-62 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the UNC-62 transcription factor. made_by : S Kim )
developmental stage
Day Four Young Adult
genotype
unc119(ed3);wgIs600(unc-62::TY1 EGFP FLAG;unc119)
Sex
hermaphrodite

Sequenced DNA Library

library_name
GSM942048: Snyder_UNC-62_GFP_D4YA_rep2 extraction2_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

ce11

Number of total reads
5821931
Reads aligned (%)
48.1
Duplicates removed (%)
10.7
Number of peaks
333 (qval < 1E-05)

ce10

Number of total reads
5821931
Reads aligned (%)
48.1
Duplicates removed (%)
10.7
Number of peaks
341 (qval < 1E-05)

Base call quality data from DBCLS SRA