Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Human Liver
chip antibody manufacturer
Wako
treatment
no treatment
gender
male
cell line
liver
chip antibody
H3K4me3 CMA323

Sequenced DNA Library

library_name
GSM942122: Chip Seq H3K27me3 in male human liver with unknown age H3K27me3_liver_hsaHH1294
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
31335441
Reads aligned (%)
64.7
Duplicates removed (%)
1.8
Number of peaks
753 (qval < 1E-05)

hg19

Number of total reads
31335441
Reads aligned (%)
64.2
Duplicates removed (%)
3.6
Number of peaks
1200 (qval < 1E-05)

Base call quality data from DBCLS SRA