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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX151387
GSM942110: Chip Seq H3K4me3 in ER:Ras expressing IMR90 with no 4OHT with shRb SLX3605; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
IMR90 Human Diploid Fibroblasts
chip antibody manufacturer
Wako
treatment
no 4OHT with shRb
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA304
Sequenced DNA Library
library_name
GSM942110: Chip Seq H3K4me3 in ER:Ras expressing IMR90 with no 4OHT with shRb SLX3605
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
72516109
Reads aligned (%)
97.1
Duplicates removed (%)
26.6
Number of peaks
20263 (qval < 1E-05)
hg19
Number of total reads
72516109
Reads aligned (%)
96.5
Duplicates removed (%)
27.9
Number of peaks
20241 (qval < 1E-05)
Base call quality data from
DBCLS SRA