SRX151374
GSM942097: Chip Seq H3K27me3 in ER:Ras expressing IMR90 d6 4OHT with sh-HMGA1/MSCV SLX3600; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Diploid Fibroblasts
chip antibody manufacturer
Wako
treatment
d6 4OHT with sh-HMGA1/MSCV
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA323

Sequenced DNA Library

library_name
GSM942097: Chip Seq H3K27me3 in ER:Ras expressing IMR90 d6 4OHT with sh-HMGA1/MSCV SLX3600
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
77862571
Reads aligned (%)
98.8
Duplicates removed (%)
5.0
Number of peaks
5481 (qval < 1E-05)

hg19

Number of total reads
77862571
Reads aligned (%)
98.4
Duplicates removed (%)
5.9
Number of peaks
5311 (qval < 1E-05)

Base call quality data from DBCLS SRA