SRX151358
GSM942081: Chip Seq H3K9me3 in ER:Ras expressing IMR90 with no treatment SLX2976; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Diploid Fibroblasts
treatment
no treatment
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA318

Sequenced DNA Library

library_name
GSM942081: Chip Seq H3K9me3 in ER:Ras expressing IMR90 with no treatment SLX2976
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
148118592
Reads aligned (%)
96.7
Duplicates removed (%)
21.3
Number of peaks
5379 (qval < 1E-05)

hg19

Number of total reads
148118592
Reads aligned (%)
94.6
Duplicates removed (%)
24.8
Number of peaks
3636 (qval < 1E-05)

Base call quality data from DBCLS SRA