SRX151356
GSM942079: Chip Seq H3K9me3 in ER:Ras expressing IMR90 with no 4OHT with sh-HMGA1/MSCV SLX3595; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Diploid Fibroblasts
treatment
no 4OHT with sh-HMGA1/MSCV
transgene
ER:Ras
gender
female
cell line
IMR90
chip antibody
H3K4me3 CMA318

Sequenced DNA Library

library_name
GSM942079: Chip Seq H3K9me3 in ER:Ras expressing IMR90 with no 4OHT with sh-HMGA1/MSCV SLX3595
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
81622221
Reads aligned (%)
97.5
Duplicates removed (%)
22.6
Number of peaks
3715 (qval < 1E-05)

hg19

Number of total reads
81622221
Reads aligned (%)
95.6
Duplicates removed (%)
26.3
Number of peaks
2742 (qval < 1E-05)

Base call quality data from DBCLS SRA