Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
BCBL1 pleural effusion lymphoma, CTCF ChIP
cell line
BCBL1
cell type
KSHV-infected pleural effusion lymphoma cells
chip antibody
rabbit anti-CTCF
antibody vendor
Millipore

Sequenced DNA Library

library_name
GSM941710: CTCF_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
26776541
Reads aligned (%)
64.3
Duplicates removed (%)
32.2
Number of peaks
43241 (qval < 1E-05)

hg38

Number of total reads
26776541
Reads aligned (%)
64.8
Duplicates removed (%)
31.9
Number of peaks
42216 (qval < 1E-05)

Base call quality data from DBCLS SRA