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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NIPBL
wikigenes
PDBj
CellType: Lymphoblastoid cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX151230
GSM941219: ChIP-Seq for Nipbl in hLCL; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NIPBL
Cell type
Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA
Attributes by original data submitter
Sample
source_name
Lymphoblastoid cells
chip antibody
Nipbl
antibody catalog number
Bethyl A301-779A
cell type
HLS554P
Sequenced DNA Library
library_name
GSM941219: ChIP-Seq for Nipbl in hLCL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24943933
Reads aligned (%)
84.5
Duplicates removed (%)
28.1
Number of peaks
7813 (qval < 1E-05)
hg19
Number of total reads
24943933
Reads aligned (%)
73.5
Duplicates removed (%)
21.0
Number of peaks
8038 (qval < 1E-05)
Base call quality data from
DBCLS SRA