SRX151229
GSM941218: ChIP-Seq for Smc1 in hLCL; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC1A

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cells
NA
NA

Attributes by original data submitter

Sample

source_name
Lymphoblastoid cells
chip antibody
Smc1
antibody catalog number
Bethyl A300-055A
cell type
HLS554P

Sequenced DNA Library

library_name
GSM941218: ChIP-Seq for Smc1 in hLCL
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28208923
Reads aligned (%)
86.1
Duplicates removed (%)
37.1
Number of peaks
15990 (qval < 1E-05)

hg19

Number of total reads
28208923
Reads aligned (%)
76.4
Duplicates removed (%)
32.2
Number of peaks
16318 (qval < 1E-05)

Base call quality data from DBCLS SRA