SRX151227
GSM941548: input AF4 HiSeq ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RS4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Acute lymphoblastic leukemia cells with MLL/AF4 translocation, input
cell type
RS4;11 ALL cells
chip antibody
none

Sequenced DNA Library

library_name
GSM941548: input_AF4_HiSeq_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
130361452
Reads aligned (%)
97.9
Duplicates removed (%)
16.0
Number of peaks
83155 (qval < 1E-05)

hg19

Number of total reads
130361452
Reads aligned (%)
97.1
Duplicates removed (%)
18.4
Number of peaks
99413 (qval < 1E-05)

Base call quality data from DBCLS SRA