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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KMT2A
wikigenes
PDBj
CellType: RS4-11
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX151222
GSM941543: MLLN ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KMT2A
Cell type
Cell type Class
Blood
Cell type
RS4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
Acute lymphoblastic leukemia cells with MLL/AF4 translocation, MLLN ChIP
cell type
RS4;11 ALL cells
chip antibody
MLLN
chip antibody host
rabbit
antibody vendor
Bethyl Laboratories
Sequenced DNA Library
library_name
GSM941543: MLLN_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
29211478
Reads aligned (%)
45.7
Duplicates removed (%)
44.1
Number of peaks
2063 (qval < 1E-05)
hg38
Number of total reads
29211478
Reads aligned (%)
46.7
Duplicates removed (%)
43.2
Number of peaks
2068 (qval < 1E-05)
Base call quality data from
DBCLS SRA