Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
2h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
input
chip antibody
none (input)
cell type
sorted primary mesodermal
developmental stage
2 hour embryo collection spanning late stage 11 to early stage 12

Sequenced DNA Library

library_name
GSM941541: input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
23223527
Reads aligned (%)
39.0
Duplicates removed (%)
69.4
Number of peaks
2403 (qval < 1E-05)

dm3

Number of total reads
23223527
Reads aligned (%)
39.5
Duplicates removed (%)
62.9
Number of peaks
4746 (qval < 1E-05)

Base call quality data from DBCLS SRA