Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
lmd

Cell type

Cell type Class
Embryo
Cell type
2h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Lmd2_ChIPSeq
chip antibody
Lmd2 [Cunha et al. 2010 PLoS Genet 6(7): e1001014]
cell type
sorted primary mesodermal
developmental stage
2 hour embryo collection spanning late stage 11 to early stage 12

Sequenced DNA Library

library_name
GSM941540: Lmd2_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
23498093
Reads aligned (%)
20.8
Duplicates removed (%)
45.0
Number of peaks
1447 (qval < 1E-05)

dm6

Number of total reads
23498093
Reads aligned (%)
17.8
Duplicates removed (%)
51.6
Number of peaks
1324 (qval < 1E-05)

Base call quality data from DBCLS SRA