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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: lmd
wikigenes
PDBj
CellType: 2h embryos
ATCC
MeSH
RIKEN BRC
SRX151218
GSM941539: Lmd1 ChIPSeq; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
lmd
Cell type
Cell type Class
Embryo
Cell type
2h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Lmd1_ChIPSeq
chip antibody
Lmd1 [Cunha et al. 2010 PLoS Genet 6(7): e1001014]
cell type
sorted primary mesodermal
developmental stage
2 hour embryo collection spanning late stage 11 to early stage 12
Sequenced DNA Library
library_name
GSM941539: Lmd1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
20984151
Reads aligned (%)
63.5
Duplicates removed (%)
23.5
Number of peaks
3983 (qval < 1E-05)
dm3
Number of total reads
20984151
Reads aligned (%)
65.3
Duplicates removed (%)
11.3
Number of peaks
8634 (qval < 1E-05)
Base call quality data from
DBCLS SRA