Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP_GATA2_ChIP-seq
cell line
LNCaP
cell type
prostate cancer cells
passages
32-34
chip antibody
GATA2
chip antibody vendor
Santa cruz

Sequenced DNA Library

library_name
GSM941194: LN-REP1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
26562419
Reads aligned (%)
77.5
Duplicates removed (%)
20.1
Number of peaks
18997 (qval < 1E-05)

hg38

Number of total reads
26562419
Reads aligned (%)
79.1
Duplicates removed (%)
19.1
Number of peaks
18629 (qval < 1E-05)

Base call quality data from DBCLS SRA