Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

U-937

Primary Tissue

Blood

Tissue Diagnosis

Lymphoma Diffuse Large B Cell

Sample

source_name

U937

cell line

U937

cell type

acute myeloid leukemia (AML) cells

transduced with

constructs expressing scrambled (sc) control

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

DNA was prepared by isolating nuclei and incubating them with DNaseI before DNA isolation. DNaseI-seq libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

59504115

Reads aligned (%)

88.2

Duplicates removed (%)

4.0

Number of peaks

15975 (qval < 1E-05)

hg19

Number of total reads

59504115

Reads aligned (%)

87.3

Duplicates removed (%)

5.7

Number of peaks

15413 (qval < 1E-05)