SRX150752
GSM940323: HOXA9 ChIP-Seq in SEM Rep 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HOXA9

Cell type

Cell type Class
Blood
Cell type
SEM
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
SEM
chip antibody
HOXA9
antibody catalog number
Abcam AB33382
cell type
SEM
cell number
50 million
library prep protocol
YoungLab_MWG
replicate
2

Sequenced DNA Library

library_name
GSM940323: HOXA9 ChIP-Seq in SEM Rep 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28168431
Reads aligned (%)
79.6
Duplicates removed (%)
7.5
Number of peaks
258 (qval < 1E-05)

hg19

Number of total reads
28168431
Reads aligned (%)
78.8
Duplicates removed (%)
8.5
Number of peaks
449 (qval < 1E-05)

Base call quality data from DBCLS SRA