Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TBL1XR1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TBLR1_(ab24550)
antibody antibodydescription
Rabbit polyclonal, immunogen: Recombinant full length protein (Human). Antibody Target: TBLR1
antibody targetdescription
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation
antibody vendorname
Abcam
antibody vendorid
ab24550
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
controlid
wgEncodeEH000706
replicate
1

Sequenced DNA Library

library_name
GSM935653: Stanford_ChipSeq_GM12878_TBLR1_(ab24550)_IgG-mus
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
51230681
Reads aligned (%)
88.7
Duplicates removed (%)
6.1
Number of peaks
16604 (qval < 1E-05)

hg38

Number of total reads
51230681
Reads aligned (%)
91.0
Duplicates removed (%)
6.6
Number of peaks
16239 (qval < 1E-05)

Base call quality data from DBCLS SRA