Antigen

Antigen Class

TFs and others

Antigen

USF2

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HepG2

cell organism

human

cell description

hepatocellular carcinoma

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

treatment

None

treatment description

No special treatment or protocol applies

antibody

USF2

antibody antibodydescription

Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2

antibody targetdescription

Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').

antibody vendorname

abcam

antibody vendorid

ab60931

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH001791

replicate

1

Sequenced DNA Library

library_name

GSM935646: Stanford_ChipSeq_HepG2_USF2_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

74603296

Reads aligned (%)

83.1

Duplicates removed (%)

3.6

Number of peaks

8372 (qval < 1E-05)

hg19

Number of total reads

74603296

Reads aligned (%)

82.3

Duplicates removed (%)

5.3

Number of peaks

8349 (qval < 1E-05)