Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
USF2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HepG2
cell organism
human
cell description
hepatocellular carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
USF2
antibody antibodydescription
Mouse monoclonal. Immunogen corresponds to amino acids 1-101 of Human USF2. Antibody Target: USF2
antibody targetdescription
Encodes a member of the basic helix-loop-helix leucine zipper family. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs (5'-CACGTG-3').
antibody vendorname
abcam
antibody vendorid
ab60931
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001791
replicate
1

Sequenced DNA Library

library_name
GSM935646: Stanford_ChipSeq_HepG2_USF2_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
74603296
Reads aligned (%)
77.9
Duplicates removed (%)
5.3
Number of peaks
8349 (qval < 1E-05)

hg38

Number of total reads
74603296
Reads aligned (%)
80.1
Duplicates removed (%)
3.6
Number of peaks
8372 (qval < 1E-05)

Base call quality data from DBCLS SRA