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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MYC
wikigenes
PDBj
CellType: NB-4
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX150722
GSM935643: Stanford ChipSeq NB4 c-Myc std
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MYC
Cell type
Cell type Class
Blood
Cell type
NB-4
Primary Tissue
Blood
Site of Extraction
Bone Marrow
Tissue Diagnosis
Leukemia
Attributes by original data submitter
Sample
source_name
NB4
biomaterial_provider
Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
NB4
cell organism
human
cell description
acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype
cancer
cell lineage
mesoderm
cell sex
U
treatment
None
treatment description
No special treatment or protocol applies
antibody
c-Myc
antibody antibodydescription
rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc
antibody targetdescription
transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-764
control
std
control description
Standard input signal for most experiments.
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000617
replicate
1
Sequenced DNA Library
library_name
GSM935643: Stanford_ChipSeq_NB4_c-Myc_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
66630497
Reads aligned (%)
82.7
Duplicates removed (%)
7.0
Number of peaks
48258 (qval < 1E-05)
hg19
Number of total reads
66630497
Reads aligned (%)
82.1
Duplicates removed (%)
8.3
Number of peaks
47944 (qval < 1E-05)
Base call quality data from
DBCLS SRA