Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF7L2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
TCF7L2_C9B9_(2565)
antibody antibodydescription
Rabbit monoclonal antibody is produced by immunizing animals with a synthetic peptide corresponding to residues surrounding Glu81 of human TCF7L2. Antibody Target: TCF7L2
antibody targetdescription
TCF4
antibody vendorname
Cell Signaling Technology
antibody vendorid
2565
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001754
replicate
1

Sequenced DNA Library

library_name
GSM935625: USC_ChipSeq_HeLa-S3_TCF7L2_C9B9_(2565)_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
71746783
Reads aligned (%)
90.1
Duplicates removed (%)
7.8
Number of peaks
22678 (qval < 1E-05)

hg38

Number of total reads
71746783
Reads aligned (%)
91.2
Duplicates removed (%)
7.1
Number of peaks
22795 (qval < 1E-05)

Base call quality data from DBCLS SRA