Antigen

Antigen Class

TFs and others

Antigen

ESRRA

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

source_name

HepG2

biomaterial_provider

ATCC

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HepG2

cell organism

human

cell description

hepatocellular carcinoma

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

treatment

forskolin

treatment description

low-glucose DMEM with 0.5% BSA supplemented with 1uM forskolin and 1mM pyruvate for 6h. (Snyder)

antibody

ERRA

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of Ets-1 of human origin. Antibody Target: ERRA

antibody targetdescription

epitope corresponding to amino acids 81-160 mapping near the N-terminus of ERRalpha of human origin

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-66882

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000755

labversion

Illumina 2.0, low confidence sequences excluded. Data paired with HepG2_Forskolin_Control.

replicate

1

Sequenced DNA Library

library_name

GSM935621: Stanford_ChipSeq_HepG2_forskolin_ERRA_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

14464225

Reads aligned (%)

92.1

Duplicates removed (%)

3.3

Number of peaks

1883 (qval < 1E-05)

hg19

Number of total reads

14464225

Reads aligned (%)

91.6

Duplicates removed (%)

3.8

Number of peaks

1953 (qval < 1E-05)