Antigen

Antigen Class

TFs and others

Antigen

STAT1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

STAT1

antibody antibodydescription

rabbit polyclonal to STAT1 (alpha) p-91 (C-24). Antibody Target: STAT1

antibody targetdescription

transcription factor, activated by interferon signalling

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-345

control

std

control description

Standard input signal for most experiments.

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000625

replicate

1

Sequenced DNA Library

library_name

GSM935612: Stanford_ChipSeq_GM12878_STAT1_std

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

52793773

Reads aligned (%)

92.1

Duplicates removed (%)

4.1

Number of peaks

1732 (qval < 1E-05)

hg19

Number of total reads

52793773

Reads aligned (%)

90.6

Duplicates removed (%)

4.9

Number of peaks

2070 (qval < 1E-05)