SRX150672
GSM935593: USC ChipSeq PBDE Input UCDavis

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
PBDE
Tissue
blood
Lineage
mesoderm
Description
peripheral blood-derived erythroblasts

Attributes by original data submitter

Sample

source_name
PBDE
biomaterial_provider
Farnham lab
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
PBDE
cell organism
human
cell description
peripheral blood-derived erythroblasts
cell lineage
mesoderm
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001778

Sequenced DNA Library

library_name
GSM935593: USC_ChipSeq_PBDE_Input_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
68722722
Reads aligned (%)
91.3
Duplicates removed (%)
8.3
Number of peaks
1428 (qval < 1E-05)

hg19

Number of total reads
68722722
Reads aligned (%)
90.7
Duplicates removed (%)
9.4
Number of peaks
1566 (qval < 1E-05)

Base call quality data from DBCLS SRA